PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00138646001
Common NameGSBRNA2T00138646001, LOC106351722
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 236aa    MW: 24599.2 Da    PI: 9.0502
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00138646001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.18.1e-382483362
               zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                         +++l+cprC+stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rk  k+s
  GSBRNA2T00138646001 24 TEQLPCPRCNSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGTRKAAKRS 83
                         6889***************************************************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-282581IPR003851Zinc finger, Dof-type
PfamPF027016.7E-332581IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9752781IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102965IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTTTSNTDAM RLHGVITANP PPATEQLPCP RCNSTNTKFC YYNNYNFSQP RHFCKSCRRY  60
WTHGGTLRDI PVGGGTRKAA KRSRTCSSSA GSRSVPLQAT PVLFPQSSIS NGVSHTVTAP  120
LDGKGSALSL SGSFTSLLNQ NATATHGSGS VLGIGLGSGY DDVSFGLGRA VWPFSTVGDA  180
GTTNVGSNGG HQGVVTIPAT WQFEGLETNN AGGFVSGEYF AWPDLSITTS GNSHK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00138646001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893791e-102AC189379.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101840.11e-173PREDICTED: dof zinc finger protein DOF3.4-like
RefseqXP_013646932.11e-173PREDICTED: dof zinc finger protein DOF3.4-like
SwissprotQ390881e-106DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBLA0A078D2151e-173A0A078D215_BRANA; BnaA01g21270D protein
TrEMBLM4EMJ01e-173M4EMJ0_BRARP; Uncharacterized protein
STRINGBra030010.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22862874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.11e-101OBF binding protein 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]